PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29968.m000654
Common NameLOC8272303, RCOM_1149760
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 249aa    MW: 27047.2 Da    PI: 6.8794
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29968.m000654genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002796118123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  29968.m000654  96 FSCNYCRRKFYSSQALGGHQNAH 118
                    89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.86E-694124No hitNo description
PROSITE profilePS5015711.38596123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTPPNSILES ENESEISGQV ASNVSLQEPS SDPSKDGNTP CSSLTDLNRL QQSPMPVSLN  60
LSLTFNASDI ELKGTGETSS EAAAPSPAAP TMPRVFSCNY CRRKFYSSQA LGGHQNAHKR  120
ERTMAKRAMR MGIFSDRYTS LASLPLHGSA YRNLGIKAHS AMHQNIIPSQ KPPDHTRGGA  180
KFEQGYYGMP VFMEDDDVGL HWPGSFRQVA GSVGGNIDLQ YAQSPNTNIV EMTPQLRTDS  240
SSPDLTLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527542.10.0PREDICTED: zinc finger protein 4
SwissprotQ392631e-47ZFP4_ARATH; Zinc finger protein 4
TrEMBLB9SNH30.0B9SNH3_RICCO; Zinc finger protein, putative
STRINGPOPTR_0010s11330.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-48zinc finger protein 4